Introduction
Napari-Bigfish is a plugin for the multi-dimensional image viewer napari. It provides an alternative graphical user interface to parts of the Big-FISH python package. Big-FISH is a python package for the analysis of smFISH images. The parts currently available via the plugin are:
minimum spot distance
removal of duplicates
auto-threshold detection
Counting of spots per cell and category cytoplasm/nucleus (not from bigfish)
Batch-Processing