API-Documentation

• napari_bigfish package
  • Submodules
    • napari_bigfish.array_util module
      • ArrayUtil
    • napari_bigfish.bigfishapp module
      • BigfishApp
    • napari_bigfish.napari_util module
      • NapariUtil
    • napari_bigfish.qtutil module
      • TableView
      • WidgetTool
  • Module contents
    • DetectFISHSpotsBatchWidget
      • DetectFISHSpotsBatchWidget.addBatchParameterWidget()
      • DetectFISHSpotsBatchWidget.addInputImagesWidget()
      • DetectFISHSpotsBatchWidget.addRunButton()
      • DetectFISHSpotsBatchWidget.onDecomposeChanged()
      • DetectFISHSpotsBatchWidget.onLayerLoaded()
      • DetectFISHSpotsBatchWidget.onSubtractBackgroundChanged()
      • DetectFISHSpotsBatchWidget.runBatch()
      • DetectFISHSpotsBatchWidget.setModel()
      • DetectFISHSpotsBatchWidget.updateScaleXY()
      • DetectFISHSpotsBatchWidget.updateScaleZ()
    • DetectFISHSpotsWidget
      • DetectFISHSpotsWidget.addBatchButton()
      • DetectFISHSpotsWidget.addCountSpotsWidget()
      • DetectFISHSpotsWidget.addDecomposeDenseRegionsWidget()
      • DetectFISHSpotsWidget.addDetectSpotsWidget()
      • DetectFISHSpotsWidget.addSpotCountingTable()
      • DetectFISHSpotsWidget.addSubtractBackgroundWidget()
      • DetectFISHSpotsWidget.findThresholdChanged()
      • DetectFISHSpotsWidget.onClickBatch()
      • DetectFISHSpotsWidget.onClickCountSpots()
      • DetectFISHSpotsWidget.onClickDecomposeDenseRegions()
      • DetectFISHSpotsWidget.onClickDetectSpots()
      • DetectFISHSpotsWidget.onClickSubtractBackground()
      • DetectFISHSpotsWidget.onFindThresholdChanged()
      • DetectFISHSpotsWidget.onLayerAddedOrRemoved()
      • DetectFISHSpotsWidget.onRemoveDuplicatesChanged()
      • DetectFISHSpotsWidget.radiusChanged()
      • DetectFISHSpotsWidget.removeDuplicatesChanged()
      • DetectFISHSpotsWidget.setModel()
      • DetectFISHSpotsWidget.sigmaChanged()
      • DetectFISHSpotsWidget.thresholdChanged()
      • DetectFISHSpotsWidget.updateAlpha()
      • DetectFISHSpotsWidget.updateBeta()
      • DetectFISHSpotsWidget.updateDecomposeRadiusXY()
      • DetectFISHSpotsWidget.updateDecomposeRadiusZ()
      • DetectFISHSpotsWidget.updateGamma()
      • DetectFISHSpotsWidget.updateLayerSelectionComboBoxes()
      • DetectFISHSpotsWidget.updateRadiusXY()
      • DetectFISHSpotsWidget.updateRadiusZ()
      • DetectFISHSpotsWidget.updateSigmaXY()
      • DetectFISHSpotsWidget.updateSigmaZ()
      • DetectFISHSpotsWidget.updateThreshold()
    • make_sample_data()