Microglia Analyzer

Contents:

  • Quick start: A user guide
  • Segmentation using a UNet2D
  • Classification using a YOLOv5
  • Measures on microglia
Microglia Analyzer
  • microglia_analyzer.tiles package
  • View page source

microglia_analyzer.tiles package

Submodules

  • microglia_analyzer.tiles.patch module
    • Patch2D
      • Patch2D.as_napari_rectangle()
  • microglia_analyzer.tiles.plot module
    • plot_patches_layout()
  • microglia_analyzer.tiles.recalibrate module
    • process_factor()
    • recalibrate_image()
    • recalibrate_shape()
  • microglia_analyzer.tiles.tiler module
    • ImageTiler2D
      • ImageTiler2D.get_grid_size()
      • ImageTiler2D.get_layout()
      • ImageTiler2D.image_to_tiles()
      • ImageTiler2D.tiles_to_image()
    • make_gradient_patch()
    • normalize()

Module contents


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