Measures on microglia

• To provide some measurements, microglia as interpreted as graphs.

• The length are in physical unit if you didn’t forget to calibrate your images.

• The final CSV contains the following data:

Column	Description
Source	Name of the image from which the following microglia were extracted.
# branches	Total number of branches in the given cell.
# leaves	Total number of leaves (== end point vertices) for this cell.
# juctions	Number of branches crossing in this cell (all vertices except leaves)
Average branch length	Average length of a branch for the given cell.
Total length	Summed length of all the branches contained within this cell.
Max branch length	Length of the longest branch for this cell.
Label	Only useful for debuging. Index of the segmented microglia on the mask.
Class	Class (Amoeboid, Intermediate or Homeostatic) attributed to this cell

• Here is an example file as it is produced by the plugin: you can download it from this link.

• Values are sepaarted with tabulations.