Microglia Analyzer
Contents:
Quick start: A user guide
Segmentation using a UNet2D
Classification using a YOLOv5
Measures on microglia
Microglia Analyzer
microglia_analyzer.custom_loss module
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microglia_analyzer.custom_loss module
microglia_analyzer.custom_loss.
compute_connected_components_penalty
(
y_pred
,
max_allowed
=
1
)
[source]
microglia_analyzer.custom_loss.
compute_skeleton_reward
(
y_pred
,
min_length
=
10
)
[source]
microglia_analyzer.custom_loss.
custom_loss
(
y_true
,
y_pred
,
alpha
=
0.5
,
beta
=
0.3
,
gamma
=
0.2
)
[source]
microglia_analyzer.custom_loss.
dice_loss_function
(
y_true
,
y_pred
)
[source]