Index

A

adjacency_graph() (in module spots_in_yeasts.spotsInYeasts)

assign_nucleus() (in module spots_in_yeasts.spotsInYeasts) associate_spots_yeasts() (in module spots_in_yeasts.spotsInYeasts)

B

bfs() (spots_in_yeasts.spotsInYeasts.YeastsPartitionGraph method)

C

cancelRow() (spots_in_yeasts.formatData.CSVtable method) create_random_lut() (in module spots_in_yeasts.spotsInYeasts)

create_reference_to() (in module spots_in_yeasts.spotsInYeasts) CSVtable (class in spots_in_yeasts.formatData)

D

dfs() (spots_in_yeasts.spotsInYeasts.YeastsPartitionGraph method)

distance_spot_nuclei() (in module spots_in_yeasts.spotsInYeasts)

E

exportTo() (spots_in_yeasts.formatData.CSVtable method)

F

fill_holes() (in module spots_in_yeasts.spotsInYeasts) find_focused_slice() (in module spots_in_yeasts.spotsInYeasts)

find_partition() (spots_in_yeasts.spotsInYeasts.YeastsPartitionGraph method) format_data_1844() (in module spots_in_yeasts.formatData) format_data_1895() (in module spots_in_yeasts.formatData)

G

get_header_1844() (in module spots_in_yeasts.formatData) get_header_1895() (in module spots_in_yeasts.formatData)

get_neighbors() (in module spots_in_yeasts.spotsInYeasts) getTitles() (spots_in_yeasts.formatData.CSVtable method)

I

is_undirected() (in module spots_in_yeasts.spotsInYeasts)

L

launch_hopcroft_karp() (spots_in_yeasts.spotsInYeasts.YeastsPartitionGraph method)

M

make_cells_lut() (spots_in_yeasts.spotsInYeasts.YeastsPartitionGraph method) make_new_labels() (spots_in_yeasts.spotsInYeasts.YeastsPartitionGraph method) make_nuclei_lut() (spots_in_yeasts.spotsInYeasts.YeastsPartitionGraph method)

module spots_in_yeasts, [1] spots_in_yeasts.formatData spots_in_yeasts.spotsInYeasts

N

newRow() (spots_in_yeasts.formatData.CSVtable method)

nuclei_from_fluo() (in module spots_in_yeasts.spotsInYeasts)

P

place_markers() (in module spots_in_yeasts.spotsInYeasts)

prepare_directory() (in module spots_in_yeasts.spotsInYeasts)

R

remove_borders() (spots_in_yeasts.spotsInYeasts.YeastsPartitionGraph method)

remove_excessive_coverage() (in module spots_in_yeasts.spotsInYeasts) remove_labels() (in module spots_in_yeasts.spotsInYeasts)

S

segment_nuclei() (in module spots_in_yeasts.spotsInYeasts) segment_spots() (in module spots_in_yeasts.spotsInYeasts) segment_transmission() (in module spots_in_yeasts.spotsInYeasts) segment_yeasts_cells() (in module spots_in_yeasts.spotsInYeasts) setup() (in module spots_in_yeasts) setValue() (spots_in_yeasts.formatData.CSVtable method)

spots_in_yeasts module, [1] spots_in_yeasts.formatData module spots_in_yeasts.spotsInYeasts module

W

write_labels_image() (in module spots_in_yeasts.spotsInYeasts)

Y

YeastsPartitionGraph (class in spots_in_yeasts.spotsInYeasts)