QuPath scripts

A collection of non project-specific scripts, that can be integrated in any workflow.

1. Content of this repository

• Basic scripts
• Segmentation with CellPose or StarDist
• Find objects and measure DAB
• Measure stained areas

2. Instructions

• All the Groovy scripts that you will find must be placed in a folder named scripts in your project's folder (create it if it doesn't exist yet).
• In case of deep-learning usage, the models must be in the models folder, located in the project's folder (create it if it doesn't exist yet).