Class: PSFBeadsKeyMeasurements
URI: microscopemetrics_schema:PSFBeadsKeyMeasurements
classDiagram
class PSFBeadsKeyMeasurements
click PSFBeadsKeyMeasurements href "../PSFBeadsKeyMeasurements"
KeyMeasurements <|-- PSFBeadsKeyMeasurements
click KeyMeasurements href "../KeyMeasurements"
PSFBeadsKeyMeasurements : average_bead_fit_r2_x
PSFBeadsKeyMeasurements : average_bead_fit_r2_y
PSFBeadsKeyMeasurements : average_bead_fit_r2_z
PSFBeadsKeyMeasurements : average_bead_fwhm_lateral_asymmetry_ratio
PSFBeadsKeyMeasurements : average_bead_fwhm_micron_x
PSFBeadsKeyMeasurements : average_bead_fwhm_micron_y
PSFBeadsKeyMeasurements : average_bead_fwhm_micron_z
PSFBeadsKeyMeasurements : average_bead_fwhm_pixel_x
PSFBeadsKeyMeasurements : average_bead_fwhm_pixel_y
PSFBeadsKeyMeasurements : average_bead_fwhm_pixel_z
PSFBeadsKeyMeasurements : average_bead_intensity_integrated
PSFBeadsKeyMeasurements : average_bead_intensity_max
PSFBeadsKeyMeasurements : average_bead_intensity_min
PSFBeadsKeyMeasurements : average_bead_intensity_std
PSFBeadsKeyMeasurements : channel_name
PSFBeadsKeyMeasurements : channel_nr
PSFBeadsKeyMeasurements : considered_axial_edge_count
PSFBeadsKeyMeasurements : considered_bad_fit_x_count
PSFBeadsKeyMeasurements : considered_bad_fit_y_count
PSFBeadsKeyMeasurements : considered_bad_fit_z_count
PSFBeadsKeyMeasurements : considered_intensity_outlier_count
PSFBeadsKeyMeasurements : considered_lateral_edge_count
PSFBeadsKeyMeasurements : considered_self_proximity_count
PSFBeadsKeyMeasurements : considered_valid_count
PSFBeadsKeyMeasurements : data_reference
PSFBeadsKeyMeasurements --> "0..1" DataReference : data_reference
click DataReference href "../DataReference"
PSFBeadsKeyMeasurements : description
PSFBeadsKeyMeasurements : fit_r2_x_mean
PSFBeadsKeyMeasurements : fit_r2_x_median
PSFBeadsKeyMeasurements : fit_r2_x_std
PSFBeadsKeyMeasurements : fit_r2_y_mean
PSFBeadsKeyMeasurements : fit_r2_y_median
PSFBeadsKeyMeasurements : fit_r2_y_std
PSFBeadsKeyMeasurements : fit_r2_z_mean
PSFBeadsKeyMeasurements : fit_r2_z_median
PSFBeadsKeyMeasurements : fit_r2_z_std
PSFBeadsKeyMeasurements : fwhm_lateral_asymmetry_ratio_mean
PSFBeadsKeyMeasurements : fwhm_lateral_asymmetry_ratio_median
PSFBeadsKeyMeasurements : fwhm_lateral_asymmetry_ratio_std
PSFBeadsKeyMeasurements : fwhm_micron_x_mean
PSFBeadsKeyMeasurements : fwhm_micron_x_median
PSFBeadsKeyMeasurements : fwhm_micron_x_std
PSFBeadsKeyMeasurements : fwhm_micron_y_mean
PSFBeadsKeyMeasurements : fwhm_micron_y_median
PSFBeadsKeyMeasurements : fwhm_micron_y_std
PSFBeadsKeyMeasurements : fwhm_micron_z_mean
PSFBeadsKeyMeasurements : fwhm_micron_z_median
PSFBeadsKeyMeasurements : fwhm_micron_z_std
PSFBeadsKeyMeasurements : fwhm_pixel_x_mean
PSFBeadsKeyMeasurements : fwhm_pixel_x_median
PSFBeadsKeyMeasurements : fwhm_pixel_x_std
PSFBeadsKeyMeasurements : fwhm_pixel_y_mean
PSFBeadsKeyMeasurements : fwhm_pixel_y_median
PSFBeadsKeyMeasurements : fwhm_pixel_y_std
PSFBeadsKeyMeasurements : fwhm_pixel_z_mean
PSFBeadsKeyMeasurements : fwhm_pixel_z_median
PSFBeadsKeyMeasurements : fwhm_pixel_z_std
PSFBeadsKeyMeasurements : intensity_integrated_mean
PSFBeadsKeyMeasurements : intensity_integrated_median
PSFBeadsKeyMeasurements : intensity_integrated_std
PSFBeadsKeyMeasurements : intensity_max_mean
PSFBeadsKeyMeasurements : intensity_max_median
PSFBeadsKeyMeasurements : intensity_max_std
PSFBeadsKeyMeasurements : intensity_min_mean
PSFBeadsKeyMeasurements : intensity_min_median
PSFBeadsKeyMeasurements : intensity_min_std
PSFBeadsKeyMeasurements : intensity_std_mean
PSFBeadsKeyMeasurements : intensity_std_median
PSFBeadsKeyMeasurements : intensity_std_std
PSFBeadsKeyMeasurements : linked_references
PSFBeadsKeyMeasurements --> "*" DataReference : linked_references
click DataReference href "../DataReference"
PSFBeadsKeyMeasurements : name
PSFBeadsKeyMeasurements : table_data
PSFBeadsKeyMeasurements --> "0..1" MetaObject : table_data
click MetaObject href "../MetaObject"
PSFBeadsKeyMeasurements : total_bead_count
Inheritance
- NamedObject
- MetricsObject
- KeyMeasurements
- PSFBeadsKeyMeasurements
- KeyMeasurements
- MetricsObject
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
channel_name | * String |
The channel name to which the measurements apply | direct |
channel_nr | * Integer |
The channel number to which the measurements apply | direct |
total_bead_count | * Integer |
Total number of beads detected in the image | direct |
considered_valid_count | * Integer |
Number of beads analyzed | direct |
considered_self_proximity_count | * Integer |
Number of beads considered for being too close to another bead | direct |
considered_lateral_edge_count | * Integer |
Number of beads considered for being too close to the edge of the image | direct |
considered_axial_edge_count | * Integer |
Number of beads considered as being too close to the top and or bottom of the... | direct |
considered_intensity_outlier_count | * Integer |
Number of beads considered as being too intense and potentially represent a c... | direct |
considered_bad_fit_z_count | * Integer |
Number of beads considered as having a bad fit quality in the z axis | direct |
considered_bad_fit_y_count | * Integer |
Number of beads considered as having a bad fit quality in the y axis | direct |
considered_bad_fit_x_count | * Integer |
Number of beads considered as having a bad fit quality in the x axis | direct |
intensity_integrated_mean | * Float |
Mean integrated intensity of the analyzed beads | direct |
intensity_integrated_median | * Float |
Median integrated intensity of the analyzed beads | direct |
intensity_integrated_std | * Float |
Standard deviation of the integrated intensity of the analyzed beads | direct |
intensity_max_mean | * Float |
Mean maximum intensity of the analyzed beads | direct |
intensity_max_median | * Float |
Median maximum intensity of the analyzed beads | direct |
intensity_max_std | * Float |
Standard deviation of the maximum intensity of the analyzed beads | direct |
intensity_min_mean | * Float |
Mean minimum intensity of the analyzed beads | direct |
intensity_min_median | * Float |
Median minimum intensity of the analyzed beads | direct |
intensity_min_std | * Float |
Standard deviation of the minimum intensity of the analyzed beads | direct |
intensity_std_mean | * Float |
Mean standard deviation of the intensity of the analyzed beads | direct |
intensity_std_median | * Float |
Median standard deviation of the intensity of the analyzed beads | direct |
intensity_std_std | * Float |
Standard deviation of the standard deviation of the intensity of the analyzed... | direct |
fit_r2_z_mean | * Float |
Mean coefficient of determination (R^2) in the z axis for the analyzed beads | direct |
fit_r2_z_median | * Float |
Median coefficient of determination (R^2) in the z axis for the analyzed bead... | direct |
fit_r2_z_std | * Float |
Standard deviation of the coefficient of determination (R^2) in the z axis fo... | direct |
fit_r2_y_mean | * Float |
Mean coefficient of determination (R^2) in the y axis for the analyzed beads | direct |
fit_r2_y_median | * Float |
Median coefficient of determination (R^2) in the y axis for the analyzed bead... | direct |
fit_r2_y_std | * Float |
Standard deviation of the coefficient of determination (R^2) in the y axis fo... | direct |
fit_r2_x_mean | * Float |
Mean coefficient of determination (R^2) in the x axis for the analyzed beads | direct |
fit_r2_x_median | * Float |
Median coefficient of determination (R^2) in the x axis for the analyzed bead... | direct |
fit_r2_x_std | * Float |
Standard deviation of the coefficient of determination (R^2) in the x axis fo... | direct |
fwhm_pixel_z_mean | * Float |
Mean FWHM for the analyzed beads in the Z axis in pixels | direct |
fwhm_pixel_z_median | * Float |
Median FWHM for the analyzed beads in the Z axis in pixels | direct |
fwhm_pixel_z_std | * Float |
Standard deviation of the FWHM for the analyzed beads in the Z axis in pixels | direct |
fwhm_pixel_y_mean | * Float |
Mean FWHM for the analyzed beads in the Y axis in pixels | direct |
fwhm_pixel_y_median | * Float |
Median FWHM for the analyzed beads in the Y axis in pixels | direct |
fwhm_pixel_y_std | * Float |
Standard deviation of the FWHM for the analyzed beads in the Y axis in pixels | direct |
fwhm_pixel_x_mean | * Float |
Mean FWHM for the analyzed beads in the X axis in pixels | direct |
fwhm_pixel_x_median | * Float |
Median FWHM for the analyzed beads in the X axis in pixels | direct |
fwhm_pixel_x_std | * Float |
Standard deviation of the FWHM for the analyzed beads in the X axis in pixels | direct |
fwhm_micron_z_mean | * Float |
Mean FWHM for the analyzed beads in the Z axis in microns | direct |
fwhm_micron_z_median | * Float |
Median FWHM for the analyzed beads in the Z axis in microns | direct |
fwhm_micron_z_std | * Float |
Standard deviation of the FWHM for the analyzed beads in the Z axis in micron... | direct |
fwhm_micron_y_mean | * Float |
Mean FWHM for the analyzed beads in the Y axis in microns | direct |
fwhm_micron_y_median | * Float |
Median FWHM for the analyzed beads in the Y axis in microns | direct |
fwhm_micron_y_std | * Float |
Standard deviation of the FWHM for the analyzed beads in the Y axis in micron... | direct |
fwhm_micron_x_mean | * Float |
Mean FWHM for the analyzed beads in the X axis in microns | direct |
fwhm_micron_x_median | * Float |
Median FWHM for the analyzed beads in the X axis in microns | direct |
fwhm_micron_x_std | * Float |
Standard deviation of the FWHM for the analyzed beads in the X axis in micron... | direct |
fwhm_lateral_asymmetry_ratio_mean | * Float |
Mean lateral FWHM asymmetry ratio for the analyzed beads | direct |
fwhm_lateral_asymmetry_ratio_median | * Float |
Median lateral FWHM asymmetry ratio for the analyzed beads | direct |
fwhm_lateral_asymmetry_ratio_std | * Float |
Standard deviation of the lateral FWHM asymmetry ratio for the analyzed beads | direct |
average_bead_fit_r2_z | * Float |
Average coefficient of determination (R^2) for the fits in the Z axis of the ... | direct |
average_bead_fit_r2_y | * Float |
Average coefficient of determination (R^2) for the fits in the Y axis of the ... | direct |
average_bead_fit_r2_x | * Float |
Average coefficient of determination (R^2) for the fits in the X axis of the ... | direct |
average_bead_fwhm_pixel_z | * Float |
FWHM for the average bead in the Z axis in pixels | direct |
average_bead_fwhm_pixel_y | * Float |
FWHM for the average bead in the Y axis in pixels | direct |
average_bead_fwhm_pixel_x | * Float |
FWHM for the average bead in the X axis in pixels | direct |
average_bead_fwhm_micron_z | * Float |
Average FWHM for the beads in the Z axis in microns | direct |
average_bead_fwhm_micron_y | * Float |
FWHM for the average bead in the Y axis in microns | direct |
average_bead_fwhm_micron_x | * Float |
FWHM for the average bead in the X axis in microns | direct |
average_bead_fwhm_lateral_asymmetry_ratio | * Float |
Lateral FWHM asymmetry ratio for the average bead | direct |
average_bead_intensity_integrated | * Float |
Integrated intensity for the average bead | direct |
average_bead_intensity_max | * Float |
Maximum intensity for the average bead | direct |
average_bead_intensity_min | * Float |
Minimum intensity for the average bead | direct |
average_bead_intensity_std | * Float |
Standard deviation of the intensity for the average bead | direct |
table_data | 0..1 MetaObject |
A non-required slot for non-serializable table data object | KeyMeasurements |
data_reference | 0..1 DataReference |
A reference to the data | MetricsObject |
linked_references | * DataReference |
A list of linked references | MetricsObject |
name | 0..1 String |
The human readable name of an entity | NamedObject |
description | 0..1 String |
A human readable description of an entity | NamedObject |
Usages
used by | used in | type | used |
---|---|---|---|
PSFBeadsOutput | key_measurements | range | PSFBeadsKeyMeasurements |
Identifier and Mapping Information
Schema Source
- from schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
Mappings
Mapping Type | Mapped Value |
---|---|
self | microscopemetrics_schema:PSFBeadsKeyMeasurements |
native | microscopemetrics_schema:PSFBeadsKeyMeasurements |
LinkML Source
Direct
name: PSFBeadsKeyMeasurements
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
is_a: KeyMeasurements
slots:
- channel_name
- channel_nr
- total_bead_count
- considered_valid_count
- considered_self_proximity_count
- considered_lateral_edge_count
- considered_axial_edge_count
- considered_intensity_outlier_count
- considered_bad_fit_z_count
- considered_bad_fit_y_count
- considered_bad_fit_x_count
- intensity_integrated_mean
- intensity_integrated_median
- intensity_integrated_std
- intensity_max_mean
- intensity_max_median
- intensity_max_std
- intensity_min_mean
- intensity_min_median
- intensity_min_std
- intensity_std_mean
- intensity_std_median
- intensity_std_std
- fit_r2_z_mean
- fit_r2_z_median
- fit_r2_z_std
- fit_r2_y_mean
- fit_r2_y_median
- fit_r2_y_std
- fit_r2_x_mean
- fit_r2_x_median
- fit_r2_x_std
- fwhm_pixel_z_mean
- fwhm_pixel_z_median
- fwhm_pixel_z_std
- fwhm_pixel_y_mean
- fwhm_pixel_y_median
- fwhm_pixel_y_std
- fwhm_pixel_x_mean
- fwhm_pixel_x_median
- fwhm_pixel_x_std
- fwhm_micron_z_mean
- fwhm_micron_z_median
- fwhm_micron_z_std
- fwhm_micron_y_mean
- fwhm_micron_y_median
- fwhm_micron_y_std
- fwhm_micron_x_mean
- fwhm_micron_x_median
- fwhm_micron_x_std
- fwhm_lateral_asymmetry_ratio_mean
- fwhm_lateral_asymmetry_ratio_median
- fwhm_lateral_asymmetry_ratio_std
- average_bead_fit_r2_z
- average_bead_fit_r2_y
- average_bead_fit_r2_x
- average_bead_fwhm_pixel_z
- average_bead_fwhm_pixel_y
- average_bead_fwhm_pixel_x
- average_bead_fwhm_micron_z
- average_bead_fwhm_micron_y
- average_bead_fwhm_micron_x
- average_bead_fwhm_lateral_asymmetry_ratio
- average_bead_intensity_integrated
- average_bead_intensity_max
- average_bead_intensity_min
- average_bead_intensity_std
Induced
name: PSFBeadsKeyMeasurements
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
is_a: KeyMeasurements
attributes:
channel_name:
name: channel_name
description: The channel name to which the measurements apply
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: channel_name
owner: PSFBeadsKeyMeasurements
domain_of:
- FieldIlluminationKeyMeasurements
- PSFBeadsKeyMeasurements
range: string
multivalued: true
channel_nr:
name: channel_nr
description: The channel number to which the measurements apply
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: channel_nr
owner: PSFBeadsKeyMeasurements
domain_of:
- FieldIlluminationKeyMeasurements
- PSFBeadsKeyMeasurements
range: integer
multivalued: true
minimum_value: 0
total_bead_count:
name: total_bead_count
description: Total number of beads detected in the image. One value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: total_bead_count
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: integer
multivalued: true
considered_valid_count:
name: considered_valid_count
description: Number of beads analyzed. One value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: considered_valid_count
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: integer
multivalued: true
considered_self_proximity_count:
name: considered_self_proximity_count
description: Number of beads considered for being too close to another bead. One
value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: considered_self_proximity_count
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: integer
multivalued: true
considered_lateral_edge_count:
name: considered_lateral_edge_count
description: Number of beads considered for being too close to the edge of the
image. One value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: considered_lateral_edge_count
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: integer
multivalued: true
considered_axial_edge_count:
name: considered_axial_edge_count
description: Number of beads considered as being too close to the top and or bottom
of the image. These beads are not considered for the z axis FWHM measurements.
One value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: considered_axial_edge_count
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: integer
multivalued: true
considered_intensity_outlier_count:
name: considered_intensity_outlier_count
description: Number of beads considered as being too intense and potentially represent
a cluster of beads. These beads have a robust z-score over the requested threshold.
Measurements on these beads are not averaged into the key measurements. One
value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: considered_intensity_outlier_count
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: integer
multivalued: true
considered_bad_fit_z_count:
name: considered_bad_fit_z_count
description: Number of beads considered as having a bad fit quality in the z axis.
The fitting meassureemnts are not averaged into the key measurements. One value
per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: considered_bad_fit_z_count
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: integer
multivalued: true
considered_bad_fit_y_count:
name: considered_bad_fit_y_count
description: Number of beads considered as having a bad fit quality in the y axis.
The fitting meassureemnts are not averaged into the key measurements. One value
per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: considered_bad_fit_y_count
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: integer
multivalued: true
considered_bad_fit_x_count:
name: considered_bad_fit_x_count
description: Number of beads considered as having a bad fit quality in the x axis.
The fitting meassureemnts are not averaged into the key measurements. One value
per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: considered_bad_fit_x_count
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: integer
multivalued: true
intensity_integrated_mean:
name: intensity_integrated_mean
description: Mean integrated intensity of the analyzed beads. One value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: intensity_integrated_mean
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
intensity_integrated_median:
name: intensity_integrated_median
description: Median integrated intensity of the analyzed beads. One value per
channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: intensity_integrated_median
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
intensity_integrated_std:
name: intensity_integrated_std
description: Standard deviation of the integrated intensity of the analyzed beads.
One value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: intensity_integrated_std
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
intensity_max_mean:
name: intensity_max_mean
description: Mean maximum intensity of the analyzed beads. One value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: intensity_max_mean
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
intensity_max_median:
name: intensity_max_median
description: Median maximum intensity of the analyzed beads. One value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: intensity_max_median
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
intensity_max_std:
name: intensity_max_std
description: Standard deviation of the maximum intensity of the analyzed beads.
One value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: intensity_max_std
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
intensity_min_mean:
name: intensity_min_mean
description: Mean minimum intensity of the analyzed beads. One value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: intensity_min_mean
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
intensity_min_median:
name: intensity_min_median
description: Median minimum intensity of the analyzed beads. One value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: intensity_min_median
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
intensity_min_std:
name: intensity_min_std
description: Standard deviation of the minimum intensity of the analyzed beads.
One value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: intensity_min_std
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
intensity_std_mean:
name: intensity_std_mean
description: Mean standard deviation of the intensity of the analyzed beads. One
value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: intensity_std_mean
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
intensity_std_median:
name: intensity_std_median
description: Median standard deviation of the intensity of the analyzed beads.
One value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: intensity_std_median
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
intensity_std_std:
name: intensity_std_std
description: Standard deviation of the standard deviation of the intensity of
the analyzed beads. One value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: intensity_std_std
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
fit_r2_z_mean:
name: fit_r2_z_mean
description: Mean coefficient of determination (R^2) in the z axis for the analyzed
beads. One value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: fit_r2_z_mean
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
fit_r2_z_median:
name: fit_r2_z_median
description: Median coefficient of determination (R^2) in the z axis for the analyzed
beads. One value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: fit_r2_z_median
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
fit_r2_z_std:
name: fit_r2_z_std
description: Standard deviation of the coefficient of determination (R^2) in the
z axis for the analyzed beads. One value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: fit_r2_z_std
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
fit_r2_y_mean:
name: fit_r2_y_mean
description: Mean coefficient of determination (R^2) in the y axis for the analyzed
beads. One value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: fit_r2_y_mean
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
fit_r2_y_median:
name: fit_r2_y_median
description: Median coefficient of determination (R^2) in the y axis for the analyzed
beads. One value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: fit_r2_y_median
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
fit_r2_y_std:
name: fit_r2_y_std
description: Standard deviation of the coefficient of determination (R^2) in the
y axis for the analyzed beads. One value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: fit_r2_y_std
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
fit_r2_x_mean:
name: fit_r2_x_mean
description: Mean coefficient of determination (R^2) in the x axis for the analyzed
beads. One value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: fit_r2_x_mean
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
fit_r2_x_median:
name: fit_r2_x_median
description: Median coefficient of determination (R^2) in the x axis for the analyzed
beads. One value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: fit_r2_x_median
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
fit_r2_x_std:
name: fit_r2_x_std
description: Standard deviation of the coefficient of determination (R^2) in the
x axis for the analyzed beads. One value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: fit_r2_x_std
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
fwhm_pixel_z_mean:
name: fwhm_pixel_z_mean
description: Mean FWHM for the analyzed beads in the Z axis in pixels. One value
per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: fwhm_pixel_z_mean
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
fwhm_pixel_z_median:
name: fwhm_pixel_z_median
description: Median FWHM for the analyzed beads in the Z axis in pixels. One value
per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: fwhm_pixel_z_median
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
fwhm_pixel_z_std:
name: fwhm_pixel_z_std
description: Standard deviation of the FWHM for the analyzed beads in the Z axis
in pixels. One value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: fwhm_pixel_z_std
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
fwhm_pixel_y_mean:
name: fwhm_pixel_y_mean
description: Mean FWHM for the analyzed beads in the Y axis in pixels. One value
per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: fwhm_pixel_y_mean
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
fwhm_pixel_y_median:
name: fwhm_pixel_y_median
description: Median FWHM for the analyzed beads in the Y axis in pixels. One value
per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: fwhm_pixel_y_median
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
fwhm_pixel_y_std:
name: fwhm_pixel_y_std
description: Standard deviation of the FWHM for the analyzed beads in the Y axis
in pixels. One value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: fwhm_pixel_y_std
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
fwhm_pixel_x_mean:
name: fwhm_pixel_x_mean
description: Mean FWHM for the analyzed beads in the X axis in pixels. One value
per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: fwhm_pixel_x_mean
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
fwhm_pixel_x_median:
name: fwhm_pixel_x_median
description: Median FWHM for the analyzed beads in the X axis in pixels. One value
per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: fwhm_pixel_x_median
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
fwhm_pixel_x_std:
name: fwhm_pixel_x_std
description: Standard deviation of the FWHM for the analyzed beads in the X axis
in pixels. One value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: fwhm_pixel_x_std
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
fwhm_micron_z_mean:
name: fwhm_micron_z_mean
description: Mean FWHM for the analyzed beads in the Z axis in microns. One value
per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: fwhm_micron_z_mean
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
fwhm_micron_z_median:
name: fwhm_micron_z_median
description: Median FWHM for the analyzed beads in the Z axis in microns. One
value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: fwhm_micron_z_median
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
fwhm_micron_z_std:
name: fwhm_micron_z_std
description: Standard deviation of the FWHM for the analyzed beads in the Z axis
in microns. One value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: fwhm_micron_z_std
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
fwhm_micron_y_mean:
name: fwhm_micron_y_mean
description: Mean FWHM for the analyzed beads in the Y axis in microns. One value
per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: fwhm_micron_y_mean
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
fwhm_micron_y_median:
name: fwhm_micron_y_median
description: Median FWHM for the analyzed beads in the Y axis in microns. One
value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: fwhm_micron_y_median
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
fwhm_micron_y_std:
name: fwhm_micron_y_std
description: Standard deviation of the FWHM for the analyzed beads in the Y axis
in microns. One value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: fwhm_micron_y_std
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
fwhm_micron_x_mean:
name: fwhm_micron_x_mean
description: Mean FWHM for the analyzed beads in the X axis in microns. One value
per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: fwhm_micron_x_mean
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
fwhm_micron_x_median:
name: fwhm_micron_x_median
description: Median FWHM for the analyzed beads in the X axis in microns. One
value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: fwhm_micron_x_median
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
fwhm_micron_x_std:
name: fwhm_micron_x_std
description: Standard deviation of the FWHM for the analyzed beads in the X axis
in microns. One value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: fwhm_micron_x_std
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
fwhm_lateral_asymmetry_ratio_mean:
name: fwhm_lateral_asymmetry_ratio_mean
description: Mean lateral FWHM asymmetry ratio for the analyzed beads. One value
per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: fwhm_lateral_asymmetry_ratio_mean
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
fwhm_lateral_asymmetry_ratio_median:
name: fwhm_lateral_asymmetry_ratio_median
description: Median lateral FWHM asymmetry ratio for the analyzed beads. One value
per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: fwhm_lateral_asymmetry_ratio_median
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
fwhm_lateral_asymmetry_ratio_std:
name: fwhm_lateral_asymmetry_ratio_std
description: Standard deviation of the lateral FWHM asymmetry ratio for the analyzed
beads. One value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: fwhm_lateral_asymmetry_ratio_std
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
multivalued: true
average_bead_fit_r2_z:
name: average_bead_fit_r2_z
description: Average coefficient of determination (R^2) for the fits in the Z
axis of the beads. One value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: average_bead_fit_r2_z
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
required: false
multivalued: true
average_bead_fit_r2_y:
name: average_bead_fit_r2_y
description: Average coefficient of determination (R^2) for the fits in the Y
axis of the beads. One value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: average_bead_fit_r2_y
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
required: false
multivalued: true
average_bead_fit_r2_x:
name: average_bead_fit_r2_x
description: Average coefficient of determination (R^2) for the fits in the X
axis of the beads. One value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: average_bead_fit_r2_x
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
required: false
multivalued: true
average_bead_fwhm_pixel_z:
name: average_bead_fwhm_pixel_z
description: FWHM for the average bead in the Z axis in pixels. One value per
channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: average_bead_fwhm_pixel_z
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
required: false
multivalued: true
average_bead_fwhm_pixel_y:
name: average_bead_fwhm_pixel_y
description: FWHM for the average bead in the Y axis in pixels. One value per
channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: average_bead_fwhm_pixel_y
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
required: false
multivalued: true
average_bead_fwhm_pixel_x:
name: average_bead_fwhm_pixel_x
description: FWHM for the average bead in the X axis in pixels. One value per
channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: average_bead_fwhm_pixel_x
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
required: false
multivalued: true
average_bead_fwhm_micron_z:
name: average_bead_fwhm_micron_z
description: Average FWHM for the beads in the Z axis in microns. One value per
channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: average_bead_fwhm_micron_z
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
required: false
multivalued: true
average_bead_fwhm_micron_y:
name: average_bead_fwhm_micron_y
description: FWHM for the average bead in the Y axis in microns. One value per
channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: average_bead_fwhm_micron_y
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
required: false
multivalued: true
average_bead_fwhm_micron_x:
name: average_bead_fwhm_micron_x
description: FWHM for the average bead in the X axis in microns. One value per
channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: average_bead_fwhm_micron_x
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
required: false
multivalued: true
average_bead_fwhm_lateral_asymmetry_ratio:
name: average_bead_fwhm_lateral_asymmetry_ratio
description: Lateral FWHM asymmetry ratio for the average bead. One value per
channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: average_bead_fwhm_lateral_asymmetry_ratio
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
required: false
multivalued: true
average_bead_intensity_integrated:
name: average_bead_intensity_integrated
description: Integrated intensity for the average bead. One value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: average_bead_intensity_integrated
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
required: false
multivalued: true
average_bead_intensity_max:
name: average_bead_intensity_max
description: Maximum intensity for the average bead. One value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: average_bead_intensity_max
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
required: false
multivalued: true
average_bead_intensity_min:
name: average_bead_intensity_min
description: Minimum intensity for the average bead. One value per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: average_bead_intensity_min
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
required: false
multivalued: true
average_bead_intensity_std:
name: average_bead_intensity_std
description: Standard deviation of the intensity for the average bead. One value
per channel.
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: average_bead_intensity_std
owner: PSFBeadsKeyMeasurements
domain_of:
- PSFBeadsKeyMeasurements
range: float
required: false
multivalued: true
table_data:
name: table_data
description: A non-required slot for non-serializable table data object
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: table_data
owner: PSFBeadsKeyMeasurements
domain_of:
- KeyMeasurements
- Table
range: MetaObject
required: false
multivalued: false
data_reference:
name: data_reference
description: A reference to the data
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: data_reference
owner: PSFBeadsKeyMeasurements
domain_of:
- MetricsObject
range: DataReference
required: false
multivalued: false
linked_references:
name: linked_references
description: A list of linked references
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
rank: 1000
alias: linked_references
owner: PSFBeadsKeyMeasurements
domain_of:
- MetricsObject
range: DataReference
required: false
multivalued: true
inlined: true
inlined_as_list: true
name:
name: name
description: The human readable name of an entity
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema/core
rank: 1000
alias: name
owner: PSFBeadsKeyMeasurements
domain_of:
- NamedObject
range: string
required: false
multivalued: false
description:
name: description
description: A human readable description of an entity
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema/core
rank: 1000
alias: description
owner: PSFBeadsKeyMeasurements
domain_of:
- NamedObject
range: string
required: false
multivalued: false