Class: PSFBeadsDataset

A PSF beads dataset

URI: microscopemetrics_schema:PSFBeadsDataset

classDiagram class PSFBeadsDataset click PSFBeadsDataset href "../PSFBeadsDataset" HasSampleMixin <|-- PSFBeadsDataset click HasSampleMixin href "../HasSampleMixin" HasInputParametersMixin <|-- PSFBeadsDataset click HasInputParametersMixin href "../HasInputParametersMixin" MetricsDataset <|-- PSFBeadsDataset click MetricsDataset href "../MetricsDataset" PSFBeadsDataset : acquisition_datetime PSFBeadsDataset : acquisition_protocol PSFBeadsDataset --> "0..1" Protocol : acquisition_protocol click Protocol href "../Protocol" PSFBeadsDataset : data_reference PSFBeadsDataset --> "0..1" DataReference : data_reference click DataReference href "../DataReference" PSFBeadsDataset : description PSFBeadsDataset : experimenter PSFBeadsDataset --> "0..1" Experimenter : experimenter click Experimenter href "../Experimenter" PSFBeadsDataset : input_data PSFBeadsDataset --> "1" PSFBeadsInputData : input_data click PSFBeadsInputData href "../PSFBeadsInputData" PSFBeadsDataset : input_parameters PSFBeadsDataset --> "0..1" PSFBeadsInputParameters : input_parameters click PSFBeadsInputParameters href "../PSFBeadsInputParameters" PSFBeadsDataset : linked_references PSFBeadsDataset --> "*" DataReference : linked_references click DataReference href "../DataReference" PSFBeadsDataset : microscope PSFBeadsDataset --> "1" Microscope : microscope click Microscope href "../Microscope" PSFBeadsDataset : name PSFBeadsDataset : output PSFBeadsDataset --> "0..1" PSFBeadsOutput : output click PSFBeadsOutput href "../PSFBeadsOutput" PSFBeadsDataset : processed PSFBeadsDataset : sample PSFBeadsDataset --> "0..1" PSFBeads : sample click PSFBeads href "../PSFBeads"

Inheritance

NamedObject
- MetricsObject
  - MetricsDataset
    - PSFBeadsDataset [ HasSampleMixin HasInputParametersMixin]

Slots

Name	Cardinality and Range	Description	Inheritance
sample	0..1 PSFBeads	The physical sample that was imaged	HasSampleMixin
input_parameters	0..1 PSFBeadsInputParameters	The input parameters for the analysis	HasInputParametersMixin
acquisition_datetime	0..1 datetime	The datetime of the acquisition	MetricsDataset
input_data	1 PSFBeadsInputData	The input data for the analysis	MetricsDataset
output	0..1 PSFBeadsOutput	The output of the analysis	MetricsDataset
microscope	1 Microscope	The microscope that was used to acquire the dataset	MetricsDataset
experimenter	0..1 Experimenter	The experimenter that performed the imaging experiment	MetricsDataset
acquisition_protocol	0..1 Protocol	The protocol used to acquire the dataset	MetricsDataset
processed	1 Boolean	Has the dataset been processed by microscope-metrics	MetricsDataset
data_reference	0..1 DataReference	A reference to the data	MetricsObject
linked_references	* DataReference	A list of linked references	MetricsObject
name	0..1 String	The human readable name of an entity	NamedObject
description	0..1 String	A human readable description of an entity	NamedObject

Identifier and Mapping Information

Schema Source

from schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema

Mappings

Mapping Type	Mapped Value
self	microscopemetrics_schema:PSFBeadsDataset
native	microscopemetrics_schema:PSFBeadsDataset

LinkML Source

Direct

name: PSFBeadsDataset
description: A PSF beads dataset
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
is_a: MetricsDataset
mixins:
- HasSampleMixin
- HasInputParametersMixin
slot_usage:
  input_data:
    name: input_data
    range: PSFBeadsInputData
  input_parameters:
    name: input_parameters
    range: PSFBeadsInputParameters
  output:
    name: output
    range: PSFBeadsOutput
  sample:
    name: sample
    range: PSFBeads

Induced

name: PSFBeadsDataset
description: A PSF beads dataset
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
is_a: MetricsDataset
mixins:
- HasSampleMixin
- HasInputParametersMixin
slot_usage:
  input_data:
    name: input_data
    range: PSFBeadsInputData
  input_parameters:
    name: input_parameters
    range: PSFBeadsInputParameters
  output:
    name: output
    range: PSFBeadsOutput
  sample:
    name: sample
    range: PSFBeads
attributes:
  sample:
    name: sample
    description: The physical sample that was imaged
    from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
    rank: 1000
    alias: sample
    owner: PSFBeadsDataset
    domain_of:
    - HasSampleMixin
    range: PSFBeads
    required: false
    multivalued: false
  input_parameters:
    name: input_parameters
    description: The input parameters for the analysis
    from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
    rank: 1000
    alias: input_parameters
    owner: PSFBeadsDataset
    domain_of:
    - HasInputParametersMixin
    range: PSFBeadsInputParameters
    required: false
    multivalued: false
  acquisition_datetime:
    name: acquisition_datetime
    description: The datetime of the acquisition
    from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
    rank: 1000
    alias: acquisition_datetime
    owner: PSFBeadsDataset
    domain_of:
    - MetricsDataset
    - Image
    - PowerSample
    range: datetime
    multivalued: false
  input_data:
    name: input_data
    description: The input data for the analysis
    from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
    rank: 1000
    alias: input_data
    owner: PSFBeadsDataset
    domain_of:
    - MetricsDataset
    range: PSFBeadsInputData
    required: true
    multivalued: false
  output:
    name: output
    description: The output of the analysis
    from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
    rank: 1000
    abstract: true
    alias: output
    owner: PSFBeadsDataset
    domain_of:
    - MetricsDataset
    range: PSFBeadsOutput
    required: false
    multivalued: false
  microscope:
    name: microscope
    description: The microscope that was used to acquire the dataset
    from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema/core
    rank: 1000
    alias: microscope
    owner: PSFBeadsDataset
    domain_of:
    - MetricsDataset
    range: Microscope
    required: true
    multivalued: false
  experimenter:
    name: experimenter
    description: The experimenter that performed the imaging experiment
    from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema/core
    rank: 1000
    alias: experimenter
    owner: PSFBeadsDataset
    domain_of:
    - MetricsDataset
    range: Experimenter
    multivalued: false
  acquisition_protocol:
    name: acquisition_protocol
    description: The protocol used to acquire the dataset
    from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema/core
    rank: 1000
    alias: acquisition_protocol
    owner: PSFBeadsDataset
    domain_of:
    - MetricsDataset
    range: Protocol
    required: false
    multivalued: false
    inlined: false
  processed:
    name: processed
    description: Has the dataset been processed by microscope-metrics
    from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema/core
    rank: 1000
    ifabsent: 'False'
    alias: processed
    owner: PSFBeadsDataset
    domain_of:
    - MetricsDataset
    range: boolean
    required: true
    multivalued: false
  data_reference:
    name: data_reference
    description: A reference to the data
    from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
    rank: 1000
    alias: data_reference
    owner: PSFBeadsDataset
    domain_of:
    - MetricsObject
    range: DataReference
    required: false
    multivalued: false
  linked_references:
    name: linked_references
    description: A list of linked references
    from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
    rank: 1000
    alias: linked_references
    owner: PSFBeadsDataset
    domain_of:
    - MetricsObject
    range: DataReference
    required: false
    multivalued: true
    inlined: true
    inlined_as_list: true
  name:
    name: name
    description: The human readable name of an entity
    from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema/core
    rank: 1000
    alias: name
    owner: PSFBeadsDataset
    domain_of:
    - NamedObject
    range: string
    required: false
    multivalued: false
  description:
    name: description
    description: A human readable description of an entity
    from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema/core
    rank: 1000
    alias: description
    owner: PSFBeadsDataset
    domain_of:
    - NamedObject
    range: string
    required: false
    multivalued: false