Class: Mask

A mask as defined by a boolean image

classDiagram class Mask click Mask href "../Mask" Shape <|-- Mask click Shape href "../Shape" Mask : c Mask : description Mask : fill_color Mask --> "0..1" Color : fill_color click Color href "../Color" Mask : mask Mask --> "0..1" ImageMask : mask click ImageMask href "../ImageMask" Mask : name Mask : stroke_color Mask --> "0..1" Color : stroke_color click Color href "../Color" Mask : stroke_width Mask : t Mask : x Mask : y Mask : z

Inheritance

NamedObject
- Shape
  - Mask

Slots

Name	Cardinality and Range	Description	Inheritance
x	1 Float	The x coordinate	direct
y	1 Float	The y coordinate	direct
mask	0..1 ImageMask	The mask image	direct
z	0..1 Float	The z coordinate	Shape
c	0..1 Integer	The c coordinate	Shape
t	0..1 Integer	The t coordinate	Shape
fill_color	0..1 Color	The fill color of the shape	Shape
stroke_color	0..1 Color	The stroke color of the shape	Shape
stroke_width	0..1 Integer	The stroke width of the shape	Shape
name	0..1 String	The human readable name of an entity	NamedObject
description	0..1 String	A human readable description of an entity	NamedObject

Usages

used by	used in	type	used
Roi	masks	range	Mask

Identifier and Mapping Information

Schema Source

from schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema

Mappings

Mapping Type	Mapped Value
self	microscopemetrics_schema:Mask
native	microscopemetrics_schema:Mask

LinkML Source

Direct

name: Mask
description: A mask as defined by a boolean image
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
is_a: Shape
slots:
- x
- y
attributes:
  mask:
    name: mask
    description: The mask image
    from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema/core
    rank: 1000
    domain_of:
    - Mask
    range: ImageMask
    multivalued: false

Induced

name: Mask
description: A mask as defined by a boolean image
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
is_a: Shape
attributes:
  mask:
    name: mask
    description: The mask image
    from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema/core
    rank: 1000
    alias: mask
    owner: Mask
    domain_of:
    - Mask
    range: ImageMask
    multivalued: false
  x:
    name: x
    description: The x coordinate
    from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
    rank: 1000
    alias: x
    owner: Mask
    domain_of:
    - Point
    - Rectangle
    - Ellipse
    - Vertex
    - Mask
    range: float
    required: true
  y:
    name: y
    description: The y coordinate
    from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
    rank: 1000
    alias: y
    owner: Mask
    domain_of:
    - Point
    - Rectangle
    - Ellipse
    - Vertex
    - Mask
    range: float
    required: true
  z:
    name: z
    description: The z coordinate
    from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
    rank: 1000
    alias: z
    owner: Mask
    domain_of:
    - Shape
    range: float
    required: false
  c:
    name: c
    description: The c coordinate
    from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
    rank: 1000
    alias: c
    owner: Mask
    domain_of:
    - Shape
    range: integer
    required: false
  t:
    name: t
    description: The t coordinate
    from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
    rank: 1000
    alias: t
    owner: Mask
    domain_of:
    - Shape
    range: integer
    required: false
  fill_color:
    name: fill_color
    description: The fill color of the shape
    from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema/core
    rank: 1000
    alias: fill_color
    owner: Mask
    domain_of:
    - Shape
    range: Color
    required: false
  stroke_color:
    name: stroke_color
    description: The stroke color of the shape
    from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema/core
    rank: 1000
    alias: stroke_color
    owner: Mask
    domain_of:
    - Shape
    range: Color
    required: false
  stroke_width:
    name: stroke_width
    description: The stroke width of the shape
    from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema/core
    rank: 1000
    ifabsent: int(1)
    alias: stroke_width
    owner: Mask
    domain_of:
    - Shape
    range: integer
    required: false
  name:
    name: name
    description: The human readable name of an entity
    from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema/core
    rank: 1000
    alias: name
    owner: Mask
    domain_of:
    - NamedObject
    range: string
    required: false
    multivalued: false
  description:
    name: description
    description: A human readable description of an entity
    from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema/core
    rank: 1000
    alias: description
    owner: Mask
    domain_of:
    - NamedObject
    range: string
    required: false
    multivalued: false