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Class: Image5D

A 5D image in TZYXC order

URI: microscopemetrics_schema:Image5D

classDiagram class Image5D ImageInline <|-- Image5D Image5D : c Image5D --|> ChannelSeries : c Image5D : data Image5D : description Image5D : image_url Image5D : name Image5D : source_image_url Image5D : t Image5D --|> TimeSeries : t Image5D : x Image5D --|> PixelSeries : x Image5D : y Image5D --|> PixelSeries : y Image5D : z Image5D --|> PixelSeries : z

Inheritance

Slots

Name Cardinality and Range Description Inheritance
t 1..1
TimeSeries
direct
z 1..1
PixelSeries
direct
y 1..1
PixelSeries
direct
x 1..1
PixelSeries
direct
c 1..1
ChannelSeries
direct
data 1..*
Float
direct
image_url 1..1
String
An URL linking to the image Image
source_image_url 0..*
String
A list of URLs linking to the images that were used as a source Image
name 0..1
String
The name of an entity NamedObject
description 0..1
String
A description of an entity NamedObject

Usages

used by used in type used
FieldIlluminationOutput intensity_map range Image5D

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema

Mappings

Mapping Type Mapped Value
self microscopemetrics_schema:Image5D
native microscopemetrics_schema:Image5D

LinkML Source

Direct

name: Image5D
implements:
- linkml:FiveDimensionalArray
- linkml:RowOrderedArray
description: A 5D image in TZYXC order
from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema
is_a: ImageInline
attributes:
  t:
    name: t
    implements:
    - linkml:axis0
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema/core_schema
    rank: 1000
    range: TimeSeries
    required: true
  z:
    name: z
    implements:
    - linkml:axis1
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema/core_schema
    rank: 1000
    range: PixelSeries
    required: true
  y:
    name: y
    implements:
    - linkml:axis2
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema/core_schema
    range: PixelSeries
    required: true
  x:
    name: x
    implements:
    - linkml:axis3
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema/core_schema
    range: PixelSeries
    required: true
  c:
    name: c
    implements:
    - linkml:axis4
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema/core_schema
    rank: 1000
    range: ChannelSeries
    required: true
  data:
    name: data
    implements:
    - linkml:elements
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema/core_schema
    multivalued: true
    range: float
    required: true

Induced

name: Image5D
implements:
- linkml:FiveDimensionalArray
- linkml:RowOrderedArray
description: A 5D image in TZYXC order
from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema
is_a: ImageInline
attributes:
  t:
    name: t
    implements:
    - linkml:axis0
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema/core_schema
    rank: 1000
    alias: t
    owner: Image5D
    domain_of:
    - Image5D
    - Shape
    range: TimeSeries
    required: true
  z:
    name: z
    implements:
    - linkml:axis1
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema/core_schema
    rank: 1000
    alias: z
    owner: Image5D
    domain_of:
    - Image5D
    - Shape
    range: PixelSeries
    required: true
  y:
    name: y
    implements:
    - linkml:axis2
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema/core_schema
    alias: y
    owner: Image5D
    domain_of:
    - ImageMask
    - Image2D
    - Image5D
    - Point
    - Rectangle
    - Ellipse
    - Vertex
    - Mask
    range: PixelSeries
    required: true
  x:
    name: x
    implements:
    - linkml:axis3
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema/core_schema
    alias: x
    owner: Image5D
    domain_of:
    - ImageMask
    - Image2D
    - Image5D
    - Point
    - Rectangle
    - Ellipse
    - Vertex
    - Mask
    range: PixelSeries
    required: true
  c:
    name: c
    implements:
    - linkml:axis4
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema/core_schema
    rank: 1000
    alias: c
    owner: Image5D
    domain_of:
    - Image5D
    - Shape
    range: ChannelSeries
    required: true
  data:
    name: data
    implements:
    - linkml:elements
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema/core_schema
    multivalued: true
    alias: data
    owner: Image5D
    domain_of:
    - ImageAsNumpy
    - ImageMask
    - Image2D
    - Image5D
    range: float
    required: true
  image_url:
    name: image_url
    description: An URL linking to the image
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema
    rank: 1000
    multivalued: false
    identifier: true
    alias: image_url
    owner: Image5D
    domain_of:
    - Image
    range: string
    required: true
  source_image_url:
    name: source_image_url
    description: A list of URLs linking to the images that were used as a source
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema
    rank: 1000
    multivalued: true
    alias: source_image_url
    owner: Image5D
    domain_of:
    - Image
    range: string
    required: false
  name:
    name: name
    description: The name of an entity
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema
    rank: 1000
    multivalued: false
    alias: name
    owner: Image5D
    domain_of:
    - NamedObject
    - Experimenter
    - Column
    range: string
    required: false
  description:
    name: description
    description: A description of an entity
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema
    rank: 1000
    multivalued: false
    alias: description
    owner: Image5D
    domain_of:
    - NamedObject
    - Roi
    - Tag
    range: string