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Class: FieldIlluminationInputParameters

URI: microscopemetrics_schema:FieldIlluminationInputParameters

classDiagram class FieldIlluminationInputParameters click FieldIlluminationInputParameters href "../FieldIlluminationInputParameters" MetricsInputParameters <|-- FieldIlluminationInputParameters click MetricsInputParameters href "../MetricsInputParameters" FieldIlluminationInputParameters : bit_depth FieldIlluminationInputParameters : corner_fraction FieldIlluminationInputParameters : saturation_threshold FieldIlluminationInputParameters : sigma

Inheritance

Slots

Name Cardinality and Range Description Inheritance
bit_depth 0..1
Integer		 Detector bit depth direct
saturation_threshold 1
Float		 Tolerated saturation threshold direct
corner_fraction 1
Float		 Input parameter: the proportion of the image to be considered as corner or ce... direct
sigma 1
Float		 Input parameter: the sigma for the smoothing gaussian filter to be applied pr... direct

Usages

used by used in type used
FieldIlluminationDataset input_parameters range FieldIlluminationInputParameters

Identifier and Mapping Information

Schema Source

  • from schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema

Mappings

Mapping Type Mapped Value
self microscopemetrics_schema:FieldIlluminationInputParameters
native microscopemetrics_schema:FieldIlluminationInputParameters

LinkML Source

Direct

name: FieldIlluminationInputParameters
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
is_a: MetricsInputParameters
slots:
- bit_depth
- saturation_threshold
- corner_fraction
- sigma
slot_usage:
  saturation_threshold:
    name: saturation_threshold
    required: true

Induced

name: FieldIlluminationInputParameters
from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
is_a: MetricsInputParameters
slot_usage:
  saturation_threshold:
    name: saturation_threshold
    required: true
attributes:
  bit_depth:
    name: bit_depth
    description: Detector bit depth
    from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
    rank: 1000
    alias: bit_depth
    owner: FieldIlluminationInputParameters
    domain_of:
    - FieldIlluminationInputParameters
    - PSFBeadsInputParameters
    range: integer
    multivalued: false
    minimum_value: 1
    maximum_value: 64
  saturation_threshold:
    name: saturation_threshold
    description: Tolerated saturation threshold. If the amount of saturated pixels
      is above this threshold,  the image is considered as saturated and the analysis
      is not performed.
    from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
    rank: 1000
    ifabsent: float(0.01)
    alias: saturation_threshold
    owner: FieldIlluminationInputParameters
    domain_of:
    - FieldIlluminationInputParameters
    - PSFBeadsInputParameters
    range: float
    required: true
    multivalued: false
    minimum_value: 0.0
    maximum_value: 1.0
  corner_fraction:
    name: corner_fraction
    description: 'Input parameter: the proportion of the image to be considered as
      corner or center'
    from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
    rank: 1000
    ifabsent: float(0.1)
    alias: corner_fraction
    owner: FieldIlluminationInputParameters
    domain_of:
    - FieldIlluminationInputParameters
    range: float
    required: true
    multivalued: false
    minimum_value: 0.01
    maximum_value: 0.49
  sigma:
    name: sigma
    description: 'Input parameter: the sigma for the smoothing gaussian filter to
      be applied prior to analysis'
    from_schema: https://MontpellierRessourcesImagerie.github.io/microscopemetrics-schema
    rank: 1000
    ifabsent: float(5.0)
    alias: sigma
    owner: FieldIlluminationInputParameters
    domain_of:
    - FieldIlluminationInputParameters
    range: float
    required: true
    multivalued: false
    minimum_value: 2.0
    maximum_value: 8.0