Class: ArgolightBOutput

URI: microscopemetrics_schema:ArgolightBOutput

classDiagram class ArgolightBOutput MetricsOutput <|-- ArgolightBOutput ArgolightBOutput : distance_measurements ArgolightBOutput --|> ArgolightBDistanceKeyValues : distance_measurements ArgolightBOutput : intensity_measurements ArgolightBOutput --|> ArgolightBIntensityKeyValues : intensity_measurements ArgolightBOutput : spots_centroids ArgolightBOutput --|> Roi : spots_centroids ArgolightBOutput : spots_distances ArgolightBOutput --|> TableAsDict : spots_distances ArgolightBOutput : spots_labels_image ArgolightBOutput --|> ImageAsNumpy : spots_labels_image ArgolightBOutput : spots_properties ArgolightBOutput --|> TableAsDict : spots_properties

Inheritance

MetricsOutput
- ArgolightBOutput

Slots

Name	Cardinality and Range	Description	Inheritance
spots_labels_image	0..1 ImageAsNumpy	Labels image of the argolight segmented spots provided as a 5D numpy array in...	direct
spots_centroids	0..* Roi	Centroids of the argolight spots provided as a list of ROIs, one per channel	direct
intensity_measurements	0..1 ArgolightBIntensityKeyValues	Key Intensity Measurements on Argolight spots	direct
distance_measurements	0..1 ArgolightBDistanceKeyValues	Key Distance Measurements on Argolight spots	direct
spots_properties	0..1 TableAsDict	Table of properties of the argolight spots	direct
spots_distances	0..1 TableAsDict	Table of distances between argolight spots	direct

Usages

used by	used in	type	used
ArgolightBDataset	output	range	ArgolightBOutput

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema

Mappings

Mapping Type	Mapped Value
self	microscopemetrics_schema:ArgolightBOutput
native	microscopemetrics_schema:ArgolightBOutput

LinkML Source

Direct

name: ArgolightBOutput
from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema
is_a: MetricsOutput
attributes:
  spots_labels_image:
    name: spots_labels_image
    description: Labels image of the argolight segmented spots provided as a 5D numpy
      array in the order TZYXC. Image intensities correspond to ROI labels
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema/samples/argolight_schema
    rank: 1000
    multivalued: false
    range: ImageAsNumpy
    required: false
  spots_centroids:
    name: spots_centroids
    description: Centroids of the argolight spots provided as a list of ROIs, one
      per channel
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema/samples/argolight_schema
    rank: 1000
    multivalued: true
    range: Roi
    required: false
  intensity_measurements:
    name: intensity_measurements
    description: Key Intensity Measurements on Argolight spots
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema/samples/argolight_schema
    rank: 1000
    multivalued: false
    range: ArgolightBIntensityKeyValues
    required: false
  distance_measurements:
    name: distance_measurements
    description: Key Distance Measurements on Argolight spots
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema/samples/argolight_schema
    rank: 1000
    multivalued: false
    range: ArgolightBDistanceKeyValues
    required: false
  spots_properties:
    name: spots_properties
    description: Table of properties of the argolight spots
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema/samples/argolight_schema
    rank: 1000
    multivalued: false
    range: TableAsDict
    required: false
  spots_distances:
    name: spots_distances
    description: Table of distances between argolight spots
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema/samples/argolight_schema
    rank: 1000
    multivalued: false
    range: TableAsDict
    required: false

Induced

name: ArgolightBOutput
from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema
is_a: MetricsOutput
attributes:
  spots_labels_image:
    name: spots_labels_image
    description: Labels image of the argolight segmented spots provided as a 5D numpy
      array in the order TZYXC. Image intensities correspond to ROI labels
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema/samples/argolight_schema
    rank: 1000
    multivalued: false
    alias: spots_labels_image
    owner: ArgolightBOutput
    domain_of:
    - ArgolightBOutput
    range: ImageAsNumpy
    required: false
  spots_centroids:
    name: spots_centroids
    description: Centroids of the argolight spots provided as a list of ROIs, one
      per channel
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema/samples/argolight_schema
    rank: 1000
    multivalued: true
    alias: spots_centroids
    owner: ArgolightBOutput
    domain_of:
    - ArgolightBOutput
    range: Roi
    required: false
  intensity_measurements:
    name: intensity_measurements
    description: Key Intensity Measurements on Argolight spots
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema/samples/argolight_schema
    rank: 1000
    multivalued: false
    alias: intensity_measurements
    owner: ArgolightBOutput
    domain_of:
    - ArgolightBOutput
    range: ArgolightBIntensityKeyValues
    required: false
  distance_measurements:
    name: distance_measurements
    description: Key Distance Measurements on Argolight spots
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema/samples/argolight_schema
    rank: 1000
    multivalued: false
    alias: distance_measurements
    owner: ArgolightBOutput
    domain_of:
    - ArgolightBOutput
    range: ArgolightBDistanceKeyValues
    required: false
  spots_properties:
    name: spots_properties
    description: Table of properties of the argolight spots
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema/samples/argolight_schema
    rank: 1000
    multivalued: false
    alias: spots_properties
    owner: ArgolightBOutput
    domain_of:
    - ArgolightBOutput
    range: TableAsDict
    required: false
  spots_distances:
    name: spots_distances
    description: Table of distances between argolight spots
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema/samples/argolight_schema
    rank: 1000
    multivalued: false
    alias: spots_distances
    owner: ArgolightBOutput
    domain_of:
    - ArgolightBOutput
    range: TableAsDict
    required: false