Class: ArgolightBIntensityKeyValues

URI: microscopemetrics_schema:ArgolightBIntensityKeyValues

classDiagram class ArgolightBIntensityKeyValues KeyValues <|-- ArgolightBIntensityKeyValues ArgolightBIntensityKeyValues : channel ArgolightBIntensityKeyValues : intensity_max_spot ArgolightBIntensityKeyValues : intensity_max_spot_roi ArgolightBIntensityKeyValues : intensity_min_spot ArgolightBIntensityKeyValues : intensity_min_spot_roi ArgolightBIntensityKeyValues : mad_mean_intensity ArgolightBIntensityKeyValues : mean_intensity ArgolightBIntensityKeyValues : median_intensity ArgolightBIntensityKeyValues : min_max_intensity_ratio ArgolightBIntensityKeyValues : nr_of_spots ArgolightBIntensityKeyValues : std_mean_intensity

Inheritance

KeyValues
- ArgolightBIntensityKeyValues

Slots

Name	Cardinality and Range	Description	Inheritance
channel	0..* Integer	The channel number to which the measurements apply	direct
nr_of_spots	0..* Integer	Number of argolight spots detected for each channel	direct
intensity_max_spot	0..* Float	Integrated intensity of the most intense spot for each channel	direct
intensity_max_spot_roi	0..* Integer	ROI number of the most intense spot for each channel	direct
intensity_min_spot	0..* Float	Integrated intensity of the least intense spot for each channel	direct
intensity_min_spot_roi	0..* Integer	ROI number of the least intense spot for each channel	direct
mean_intensity	0..* Float	Mean of all spots integrated intensity for each channel	direct
median_intensity	0..* Float	Median of all spots integrated intensity for each channel	direct
std_mean_intensity	0..* Float	Standard deviation of all spots integrated intensity for each channel	direct
mad_mean_intensity	0..* Float	Median absolute deviation of all spots integrated intensity for each channel	direct
min_max_intensity_ratio	0..* Float	Ratio between the integrated intensities between the most intense and the lea...	direct

Usages

used by	used in	type	used
ArgolightBOutput	intensity_measurements	range	ArgolightBIntensityKeyValues

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema

Mappings

Mapping Type	Mapped Value
self	microscopemetrics_schema:ArgolightBIntensityKeyValues
native	microscopemetrics_schema:ArgolightBIntensityKeyValues

LinkML Source

Direct

name: ArgolightBIntensityKeyValues
from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema
is_a: KeyValues
slots:
- channel
- nr_of_spots
- intensity_max_spot
- intensity_max_spot_roi
- intensity_min_spot
- intensity_min_spot_roi
- mean_intensity
- median_intensity
- std_mean_intensity
- mad_mean_intensity
- min_max_intensity_ratio

Induced

name: ArgolightBIntensityKeyValues
from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema
is_a: KeyValues
attributes:
  channel:
    name: channel
    description: The channel number to which the measurements apply
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema
    rank: 1000
    multivalued: true
    alias: channel
    owner: ArgolightBIntensityKeyValues
    domain_of:
    - ArgolightBIntensityKeyValues
    - ArgolightEKeyValues
    - FieldIlluminationKeyValues
    range: integer
  nr_of_spots:
    name: nr_of_spots
    description: Number of argolight spots detected for each channel
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema
    rank: 1000
    multivalued: true
    alias: nr_of_spots
    owner: ArgolightBIntensityKeyValues
    domain_of:
    - ArgolightBIntensityKeyValues
    range: integer
  intensity_max_spot:
    name: intensity_max_spot
    description: Integrated intensity of the most intense spot for each channel
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema
    rank: 1000
    multivalued: true
    alias: intensity_max_spot
    owner: ArgolightBIntensityKeyValues
    domain_of:
    - ArgolightBIntensityKeyValues
    range: float
  intensity_max_spot_roi:
    name: intensity_max_spot_roi
    description: ROI number of the most intense spot for each channel
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema
    rank: 1000
    multivalued: true
    alias: intensity_max_spot_roi
    owner: ArgolightBIntensityKeyValues
    domain_of:
    - ArgolightBIntensityKeyValues
    range: integer
  intensity_min_spot:
    name: intensity_min_spot
    description: Integrated intensity of the least intense spot for each channel
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema
    rank: 1000
    multivalued: true
    alias: intensity_min_spot
    owner: ArgolightBIntensityKeyValues
    domain_of:
    - ArgolightBIntensityKeyValues
    range: float
  intensity_min_spot_roi:
    name: intensity_min_spot_roi
    description: ROI number of the least intense spot for each channel
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema
    rank: 1000
    multivalued: true
    alias: intensity_min_spot_roi
    owner: ArgolightBIntensityKeyValues
    domain_of:
    - ArgolightBIntensityKeyValues
    range: integer
  mean_intensity:
    name: mean_intensity
    description: Mean of all spots integrated intensity for each channel
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema
    rank: 1000
    multivalued: true
    alias: mean_intensity
    owner: ArgolightBIntensityKeyValues
    domain_of:
    - ArgolightBIntensityKeyValues
    range: float
  median_intensity:
    name: median_intensity
    description: Median of all spots integrated intensity for each channel
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema
    rank: 1000
    multivalued: true
    alias: median_intensity
    owner: ArgolightBIntensityKeyValues
    domain_of:
    - ArgolightBIntensityKeyValues
    range: float
  std_mean_intensity:
    name: std_mean_intensity
    description: Standard deviation of all spots integrated intensity for each channel
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema
    rank: 1000
    multivalued: true
    alias: std_mean_intensity
    owner: ArgolightBIntensityKeyValues
    domain_of:
    - ArgolightBIntensityKeyValues
    range: float
  mad_mean_intensity:
    name: mad_mean_intensity
    description: Median absolute deviation of all spots integrated intensity for each
      channel
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema
    rank: 1000
    multivalued: true
    alias: mad_mean_intensity
    owner: ArgolightBIntensityKeyValues
    domain_of:
    - ArgolightBIntensityKeyValues
    range: float
  min_max_intensity_ratio:
    name: min_max_intensity_ratio
    description: Ratio between the integrated intensities between the most intense
      and the least intense spots for each channel
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema
    rank: 1000
    multivalued: true
    alias: min_max_intensity_ratio
    owner: ArgolightBIntensityKeyValues
    domain_of:
    - ArgolightBIntensityKeyValues
    range: float