Class: ArgolightBDataset

An Argolight sample pattern B dataset

URI: microscopemetrics_schema:ArgolightBDataset

classDiagram class ArgolightBDataset MetricsDataset <|-- ArgolightBDataset ArgolightBDataset : acquisition_date ArgolightBDataset : comment ArgolightBDataset --|> Comment : comment ArgolightBDataset : description ArgolightBDataset : experimenter ArgolightBDataset --|> Experimenter : experimenter ArgolightBDataset : input ArgolightBDataset --|> ArgolightBInput : input ArgolightBDataset : name ArgolightBDataset : output ArgolightBDataset --|> ArgolightBOutput : output ArgolightBDataset : processed ArgolightBDataset : processing_date ArgolightBDataset : processing_log ArgolightBDataset : sample ArgolightBDataset --|> Sample : sample

Inheritance

NamedObject
- MetricsDataset
  - ArgolightBDataset

Slots

Name	Cardinality and Range	Description	Inheritance
input	1..1 ArgolightBInput	An input element for the analysis	direct
output	0..1 ArgolightBOutput	An output element from the analysis	direct
sample	0..1 Sample	The sample that was imaged	MetricsDataset
experimenter	0..* Experimenter	The experimenter that performed the imaging experiment	MetricsDataset
acquisition_date	0..1 Date	The date of the acquisition	MetricsDataset
processed	1..1 Boolean	Has the dataset been processed by microscope-metrics	MetricsDataset
processing_date	0..1 Date	The date of the processing by microscope-metrics	MetricsDataset
processing_log	0..1 String	The log of the processing by microscope-metrics	MetricsDataset
comment	0..* Comment	A human readable comment about the dataset	MetricsDataset
name	0..1 String	The name of an entity	NamedObject
description	0..1 String	A description of an entity	NamedObject

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema

Mappings

Mapping Type	Mapped Value
self	microscopemetrics_schema:ArgolightBDataset
native	microscopemetrics_schema:ArgolightBDataset

LinkML Source

Direct

name: ArgolightBDataset
description: An Argolight sample pattern B dataset
from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema
is_a: MetricsDataset
attributes:
  input:
    name: input
    description: An input element for the analysis
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema/samples/argolight_schema
    rank: 1000
    multivalued: false
    range: ArgolightBInput
    required: true
  output:
    name: output
    description: An output element from the analysis
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema/samples/argolight_schema
    rank: 1000
    multivalued: false
    range: ArgolightBOutput
    required: false
rules:
- preconditions:
    slot_conditions:
      processed:
        name: processed
        equals_number: 1
  postconditions:
    slot_conditions:
      output:
        name: output
        required: true

Induced

name: ArgolightBDataset
description: An Argolight sample pattern B dataset
from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema
is_a: MetricsDataset
attributes:
  input:
    name: input
    description: An input element for the analysis
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema/samples/argolight_schema
    rank: 1000
    multivalued: false
    alias: input
    owner: ArgolightBDataset
    domain_of:
    - ArgolightBDataset
    - ArgolightEDataset
    - FieldIlluminationDataset
    range: ArgolightBInput
    required: true
  output:
    name: output
    description: An output element from the analysis
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema/samples/argolight_schema
    rank: 1000
    multivalued: false
    alias: output
    owner: ArgolightBDataset
    domain_of:
    - ArgolightBDataset
    - ArgolightEDataset
    - FieldIlluminationDataset
    range: ArgolightBOutput
    required: false
  sample:
    name: sample
    description: The sample that was imaged
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema/core_schema
    rank: 1000
    multivalued: false
    alias: sample
    owner: ArgolightBDataset
    domain_of:
    - MetricsDataset
    range: Sample
    inlined: false
  experimenter:
    name: experimenter
    description: The experimenter that performed the imaging experiment
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema/core_schema
    rank: 1000
    multivalued: true
    alias: experimenter
    owner: ArgolightBDataset
    domain_of:
    - MetricsDataset
    range: Experimenter
  acquisition_date:
    name: acquisition_date
    description: The date of the acquisition
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema/core_schema
    rank: 1000
    multivalued: false
    alias: acquisition_date
    owner: ArgolightBDataset
    domain_of:
    - MetricsDataset
    range: date
  processed:
    name: processed
    description: Has the dataset been processed by microscope-metrics
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema/core_schema
    rank: 1000
    multivalued: false
    ifabsent: 'False'
    alias: processed
    owner: ArgolightBDataset
    domain_of:
    - MetricsDataset
    range: boolean
    required: true
  processing_date:
    name: processing_date
    description: The date of the processing by microscope-metrics
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema/core_schema
    rank: 1000
    multivalued: false
    alias: processing_date
    owner: ArgolightBDataset
    domain_of:
    - MetricsDataset
    range: date
  processing_log:
    name: processing_log
    description: The log of the processing by microscope-metrics
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema/core_schema
    rank: 1000
    multivalued: false
    alias: processing_log
    owner: ArgolightBDataset
    domain_of:
    - MetricsDataset
    range: string
  comment:
    name: comment
    description: A human readable comment about the dataset
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema/core_schema
    rank: 1000
    multivalued: true
    alias: comment
    owner: ArgolightBDataset
    domain_of:
    - MetricsDataset
    range: Comment
    required: false
  name:
    name: name
    description: The name of an entity
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema
    rank: 1000
    multivalued: false
    alias: name
    owner: ArgolightBDataset
    domain_of:
    - NamedObject
    - Experimenter
    - Column
    range: string
    required: false
  description:
    name: description
    description: A description of an entity
    from_schema: https://w3id.org/MontpellierRessourcesImagerie/microscopemetrics-schema
    rank: 1000
    multivalued: false
    alias: description
    owner: ArgolightBDataset
    domain_of:
    - NamedObject
    - Roi
    - Tag
    range: string
rules:
- preconditions:
    slot_conditions:
      processed:
        name: processed
        equals_number: 1
  postconditions:
    slot_conditions:
      output:
        name: output
        required: true