Microglia Analyzer

Contents:

• Quick start: A user guide
  • 1. Introduction
  • 2. Install the plugin
    • A. Development versions
    • B. Stable versions
  • 3. Notes
  • 4. Quick start
    • Patches from calibrated images
    • Annotate your data for YOLO and UNet2D
    • How to use the “Microglia Analyzer” widget?
• Segmentation using a UNet2D
  • 0. What is UNet2D?
  • 1. Get your data ready
  • 2. Data augmentation
  • 3. Filaments extraction
  • 4. Setup
  • 5. Usage
• Classification using a YOLOv5
  • 1. Get your data ready
  • 2. Data augmentation
  • 3. Setup
  • 4. Bind classification to segmentation
• Measures on microglia