Index B | C | D | E | F | G | I | K | L | M | N | O | P | R | S | T | U | W B BaseMorphologicalOperator (class in ddd_pylib.morphology) C checkAxes() (ddd_pylib.tracking.PointsTrackingOperator method) completeCalibrationFrom() (ddd_pylib.ImageUtils static method) ConnectedComponentsLabelingOperator (class in ddd_pylib.labeling) copyCalibrationTo() (ddd_pylib.ImageUtils static method) CropOperator (class in ddd_pylib.image_manip) D ddd_pylib module ddd_pylib.image_manip module ddd_pylib.image_manip.fast_fourier_transform_operator module ddd_pylib.labeling module ddd_pylib.labels_manip module ddd_pylib.morphology module ddd_pylib.points_manip module ddd_pylib.tracking module defaultBackgroundLabel() (ddd_pylib.points_manip.RemoveBackgroundPointsOperator static method) defaultBlackBackground() (ddd_pylib.image_manip.FindExtremaOperator static method) (ddd_pylib.labeling.ThresholdOperator static method) defaultBorderAxes() (ddd_pylib.labels_manip.KillBorderLabelsOperator static method) (ddd_pylib.labels_manip.ListBorderValuesOperator static method) defaultBorderSize() (ddd_pylib.labels_manip.KillBorderLabelsOperator static method) (ddd_pylib.labels_manip.ListBorderValuesOperator static method) defaultConnectivity() (ddd_pylib.labeling.ConnectedComponentsLabelingOperator static method) defaultDirection() (ddd_pylib.image_manip.ResliceOperator static method) defaultDistanceThreshold() (ddd_pylib.points_manip.MergeClosePointsOperator static method) defaultDowncastRule() (ddd_pylib.image_manip.TypeCastOperator static method) defaultFixedRange() (ddd_pylib.labeling.ThresholdOperator static method) defaultIndependentTime() (ddd_pylib.labeling.ThresholdOperator static method) defaultIndividualTimePoints() (ddd_pylib.image_manip.NormalizeOperator static method) defaultInterpolation() (ddd_pylib.image_manip.RescaleOperator static method) defaultKeepTimePosition() (ddd_pylib.image_manip.ResliceOperator static method) defaultKernelRadius() (ddd_pylib.morphology.BaseMorphologicalOperator static method) defaultKernelShape() (ddd_pylib.morphology.BaseMorphologicalOperator static method) defaultMethod() (ddd_pylib.labeling.ThresholdOperator static method) defaultOperationName() (ddd_pylib.image_manip.ImageCalculatorOperator static method) defaultProjectionAxis() (ddd_pylib.image_manip.ProjectionOperator static method) defaultProjectionMethod() (ddd_pylib.image_manip.ProjectionOperator static method) defaultProminence() (ddd_pylib.image_manip.FindExtremaOperator static method) defaultScale() (ddd_pylib.image_manip.RescaleOperator static method) defaultTargetRange() (ddd_pylib.image_manip.NormalizeOperator static method) defaultTargetType() (ddd_pylib.image_manip.TypeCastOperator static method) E EDTOperator (in module ddd_pylib.image_manip) ensureAxes() (ddd_pylib.ImageUtils static method) ensureCalibration() (ddd_pylib.ImageUtils static method) EuclideanDistanceTransformOperator (class in ddd_pylib.image_manip) F FastFourierTransformOperator (class in ddd_pylib.image_manip.fast_fourier_transform_operator) FilterLabelsPropertiesOperator (class in ddd_pylib.labels_manip) FindExtremaOperator (class in ddd_pylib.image_manip) G getAdaptiveStep() (ddd_pylib.tracking.TrackpyStrategy method) getAdaptiveStop() (ddd_pylib.tracking.TrackpyStrategy method) getAnisotropy() (ddd_pylib.ImageUtils static method) getBackgroundLabel() (ddd_pylib.points_manip.RemoveBackgroundPointsOperator method) getCalibratedDataFrame() (ddd_pylib.tracking.PointsTrackingOperator method) getCurrentOperation() (ddd_pylib.image_manip.ImageCalculatorOperator method) getCurrentOperationName() (ddd_pylib.image_manip.ImageCalculatorOperator method) getDataFrame() (ddd_pylib.labels_manip.LabelsPropertiesOperator method) getDistanceThreshold() (ddd_pylib.points_manip.MergeClosePointsOperator method) getDowncastRule() (ddd_pylib.image_manip.TypeCastOperator method) getInterpolation() (ddd_pylib.image_manip.RescaleOperator method) getKernel() (ddd_pylib.morphology.BaseMorphologicalOperator method) getLabelsImage() (ddd_pylib.points_manip.RemoveBackgroundPointsOperator method) getMainImage() (ddd_pylib.image_manip.fast_fourier_transform_operator.ImageOperator method) getNTimePoints() (ddd_pylib.image_manip.fast_fourier_transform_operator.ImageOperator method) getOutputDims() (ddd_pylib.image_manip.fast_fourier_transform_operator.ImageOperator method) (ddd_pylib.image_manip.ResliceOperator method) getPrefix() (ddd_pylib.image_manip.CropOperator method) (ddd_pylib.image_manip.EuclideanDistanceTransformOperator method) (ddd_pylib.image_manip.fast_fourier_transform_operator.FastFourierTransformOperator method) (ddd_pylib.image_manip.FindExtremaOperator method) (ddd_pylib.image_manip.ImageCalculatorOperator method) (ddd_pylib.image_manip.InvertOperator method) (ddd_pylib.image_manip.NormalizeOperator method) (ddd_pylib.image_manip.ProjectionOperator method) (ddd_pylib.image_manip.ResampleIsotropicOperator method) (ddd_pylib.image_manip.RescaleOperator method) (ddd_pylib.image_manip.ResliceOperator method) (ddd_pylib.image_manip.SplitAxisOperator method) (ddd_pylib.image_manip.TypeCastOperator method) (ddd_pylib.labeling.ConnectedComponentsLabelingOperator method) (ddd_pylib.labeling.SeededWatershedOperator method) (ddd_pylib.labeling.ThresholdOperator method) (ddd_pylib.labels_manip.FilterLabelsPropertiesOperator method) (ddd_pylib.labels_manip.KillBorderLabelsOperator method) (ddd_pylib.labels_manip.LabelsPropertiesOperator method) (ddd_pylib.labels_manip.LabelsToPointsOperator method) (ddd_pylib.labels_manip.ListBorderValuesOperator method) (ddd_pylib.labels_manip.MergeLabelsOperator method) (ddd_pylib.labels_manip.RemapLabelsOperator method) (ddd_pylib.labels_manip.RemoveLabelsOperator method) (ddd_pylib.labels_manip.ReplaceValuesOperator method) (ddd_pylib.points_manip.MergeClosePointsOperator method) (ddd_pylib.points_manip.RemoveBackgroundPointsOperator method) (ddd_pylib.tracking.ObjectsTrackingOperator method) (ddd_pylib.tracking.PointsTrackingOperator method) getProjectionAxis() (ddd_pylib.image_manip.ProjectionOperator method) getProjectionMethod() (ddd_pylib.image_manip.ProjectionOperator method) getProperties() (ddd_pylib.labels_manip.LabelsPropertiesOperator method) getScale() (ddd_pylib.image_manip.ResampleIsotropicOperator method) (ddd_pylib.image_manip.RescaleOperator method) getSecondaryImage() (ddd_pylib.image_manip.ImageCalculatorOperator method) (ddd_pylib.labels_manip.LabelsPropertiesOperator method) getSeeds() (ddd_pylib.labeling.SeededWatershedOperator method) getStrategy() (ddd_pylib.tracking.TrackingBase method) getTargetRange() (ddd_pylib.image_manip.NormalizeOperator method) getTargetType() (ddd_pylib.image_manip.TypeCastOperator method) I ImageCalculatorOperator (class in ddd_pylib.image_manip) ImageOperator (class in ddd_pylib.image_manip.fast_fourier_transform_operator) ImageUtils (class in ddd_pylib) InvertOperator (class in ddd_pylib.image_manip) K Kernel (class in ddd_pylib.morphology) KillBorderLabelsOperator (class in ddd_pylib.labels_manip) L LabelsPropertiesOperator (class in ddd_pylib.labels_manip) LabelsToPointsOperator (class in ddd_pylib.labels_manip) LapTrackStrategy (class in ddd_pylib.tracking) ListBorderValuesOperator (class in ddd_pylib.labels_manip) M makeKernel() (ddd_pylib.morphology.Kernel static method) makeResultName() (ddd_pylib.image_manip.fast_fourier_transform_operator.ImageOperator method) MergeClosePointsOperator (class in ddd_pylib.points_manip) MergeLabelsOperator (class in ddd_pylib.labels_manip) module ddd_pylib ddd_pylib.image_manip ddd_pylib.image_manip.fast_fourier_transform_operator ddd_pylib.labeling ddd_pylib.labels_manip ddd_pylib.morphology ddd_pylib.points_manip ddd_pylib.tracking N NormalizeOperator (class in ddd_pylib.image_manip) O ObjectsTrackingOperator (class in ddd_pylib.tracking) P PointsTrackingOperator (class in ddd_pylib.tracking) ProjectionOperator (class in ddd_pylib.image_manip) R relabelWithTracks() (ddd_pylib.tracking.ObjectsTrackingOperator method) RemapLabelsOperator (class in ddd_pylib.labels_manip) RemoveBackgroundPointsOperator (class in ddd_pylib.points_manip) removeExtraAxes() (ddd_pylib.ImageUtils static method) RemoveLabelsOperator (class in ddd_pylib.labels_manip) ReplaceValuesOperator (class in ddd_pylib.labels_manip) ResampleIsotropicOperator (class in ddd_pylib.image_manip) RescaleOperator (class in ddd_pylib.image_manip) ResliceOperator (class in ddd_pylib.image_manip) S sanityCheck() (ddd_pylib.image_manip.CropOperator method) (ddd_pylib.image_manip.EuclideanDistanceTransformOperator method) (ddd_pylib.image_manip.fast_fourier_transform_operator.ImageOperator method) (ddd_pylib.image_manip.ImageCalculatorOperator method) (ddd_pylib.image_manip.ProjectionOperator method) (ddd_pylib.image_manip.ResampleIsotropicOperator method) (ddd_pylib.image_manip.RescaleOperator method) (ddd_pylib.image_manip.ResliceOperator method) (ddd_pylib.image_manip.SplitAxisOperator method) (ddd_pylib.labels_manip.ReplaceValuesOperator method) (ddd_pylib.points_manip.RemoveBackgroundPointsOperator method) scaleToTuple() (ddd_pylib.ImageUtils static method) SeededWatershedOperator (class in ddd_pylib.labeling) setAdaptiveStep() (ddd_pylib.tracking.TrackpyStrategy method) setAdaptiveStop() (ddd_pylib.tracking.TrackpyStrategy method) setAxis() (ddd_pylib.image_manip.fast_fourier_transform_operator.FastFourierTransformOperator method) setBackgroundLabel() (ddd_pylib.points_manip.RemoveBackgroundPointsOperator method) setBlackBackground() (ddd_pylib.image_manip.FindExtremaOperator method) (ddd_pylib.labeling.ThresholdOperator method) setBorderAxes() (ddd_pylib.labels_manip.KillBorderLabelsOperator method) (ddd_pylib.labels_manip.ListBorderValuesOperator method) setBorderSize() (ddd_pylib.labels_manip.KillBorderLabelsOperator method) (ddd_pylib.labels_manip.ListBorderValuesOperator method) setConnectivity() (ddd_pylib.labeling.ConnectedComponentsLabelingOperator method) setCropsList() (ddd_pylib.image_manip.CropOperator method) setDirection() (ddd_pylib.image_manip.ResliceOperator method) setDistanceThreshold() (ddd_pylib.points_manip.MergeClosePointsOperator method) setDowncastRule() (ddd_pylib.image_manip.TypeCastOperator method) setFilters() (ddd_pylib.labels_manip.FilterLabelsPropertiesOperator method) setIndependentTime() (ddd_pylib.labeling.ThresholdOperator method) setIndividualTimePoints() (ddd_pylib.image_manip.NormalizeOperator method) setInterpolation() (ddd_pylib.image_manip.RescaleOperator method) setKernelRadius() (ddd_pylib.morphology.BaseMorphologicalOperator method) setKernelShape() (ddd_pylib.morphology.BaseMorphologicalOperator method) setLabelsImage() (ddd_pylib.points_manip.RemoveBackgroundPointsOperator method) setMainImage() (ddd_pylib.image_manip.fast_fourier_transform_operator.ImageOperator method) setMergedLabels() (ddd_pylib.labels_manip.MergeLabelsOperator method) setMorphological() (ddd_pylib.labeling.SeededWatershedOperator method) setNorm() (ddd_pylib.image_manip.fast_fourier_transform_operator.FastFourierTransformOperator method) setOperation() (ddd_pylib.image_manip.ImageCalculatorOperator method) setProjectionAxis() (ddd_pylib.image_manip.ProjectionOperator method) setProjectionMethod() (ddd_pylib.image_manip.ProjectionOperator method) setProminence() (ddd_pylib.image_manip.FindExtremaOperator method) setProperties() (ddd_pylib.labels_manip.LabelsPropertiesOperator method) setRemovedLabels() (ddd_pylib.labels_manip.RemoveLabelsOperator method) setResultTable() (ddd_pylib.labels_manip.FilterLabelsPropertiesOperator method) setScale() (ddd_pylib.image_manip.ResampleIsotropicOperator method) (ddd_pylib.image_manip.RescaleOperator method) setSecondaryImage() (ddd_pylib.image_manip.ImageCalculatorOperator method) (ddd_pylib.labels_manip.LabelsPropertiesOperator method) setSeeds() (ddd_pylib.labeling.SeededWatershedOperator method) setSplittingAxis() (ddd_pylib.image_manip.SplitAxisOperator method) setStrategy() (ddd_pylib.tracking.TrackingBase method) setTargetRange() (ddd_pylib.image_manip.NormalizeOperator method) setTargetType() (ddd_pylib.image_manip.TypeCastOperator method) setThresholdMethod() (ddd_pylib.labeling.ThresholdOperator method) setThresholdRange() (ddd_pylib.labeling.ThresholdOperator method) setThresholdValue() (ddd_pylib.labeling.ThresholdOperator method) setValuesDict() (ddd_pylib.labels_manip.ReplaceValuesOperator method) SplitAxisOperator (class in ddd_pylib.image_manip) switchInverse() (ddd_pylib.image_manip.fast_fourier_transform_operator.FastFourierTransformOperator method) T ThresholdOperator (class in ddd_pylib.labeling) TrackingBase (class in ddd_pylib.tracking) TrackpyStrategy (class in ddd_pylib.tracking) TypeCastOperator (class in ddd_pylib.image_manip) U unitsToTuple() (ddd_pylib.ImageUtils static method) W writeTiff() (ddd_pylib.ImageUtils static method)