bacteria_density.process module

bacteria_density.process.control_affectations(mask, affectations)

bacteria_density.process.keep_largest(mask)

Searches for the biggest connected component within a binary mask and isolates it. The input image is not modified.

Parameters:

mask (-) – An image encoded on uint8 containing only 0 and 1.

Returns:

(np.ndarray)

bacteria_density.process.make_affectations(mask, path)

bacteria_density.process.make_metric_control(values, bins_indices, med_path, shape, metric, region_folder)