Bacteria Density Analyzer

Contents:

• Introduction to “Bacteria Density Analyzer”
  • 1. Introduction
  • 2. Install the plugin
    • A. Development versions
    • B. Stable versions
• Bacteria Density Analyzer: Abstract
  • 0. User provided data
    • A. Images
    • B. Regions of interest
    • C. Starting points
  • 1. Workflow description
    • A. Build a mask of filaments
    • B. Skeletonize filaments
    • C. Extract medial path
    • D. Measures
• Bacteria Density Analyzer: User’s guide
  • 0. Load the images and open the plugin’s panel
  • 1. Segmentation
  • 2. Measures
  • 3. ROIs
  • 4. Settings
  • 5. Workflow
  • 6. Optional